Derrick E Fouts: search on Z-Library

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1

A Cloned Erwinia chrysanthemi Hrp (Type III Protein Secretion) System Functions in Escherichia coli to Deliver Pseudomonas syringae Avr Signals to Plant Cells and to Secrete Avr Proteins in Culture

Jong Hyun Ham, David W. Bauer, Derrick E. Fouts and Alan Collmer

Journal:

Proceedings of the National Academy of Sciences

Year:

1998

Language:

english

File:

PDF, 1.73 MB

english, 1998

2

The gut mycobiome: a novel player in chronic liver diseases

Jiang, Lu, StÃ¤rkel, Peter, Fan, Jian-Gao, Fouts, Derrick Eugene, Bacher, Petra, Schnabl, Bernd

Journal:

Journal of Gastroenterology

Year:

2020

File:

PDF, 278 KB

2020

3

What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira

Fouts, Derrick E., Matthias, Michael A., Adhikarla, Haritha, Adler, Ben, Amorim-Santos, Luciane, Berg, Douglas E., Bulach, Dieter, Buschiazzo, Alejandro, Chang, Yung-Fu, Galloway, Renee L., Haake, Dav

Journal:

PLoS Neglected Tropical Diseases

Year:

2016

Language:

english

File:

PDF, 4.07 MB

english, 2016

4

Complete Genome Sequence of the N2-Fixing Broad Host Range Endophyte Klebsiella pneumoniae 342 and Virulence Predictions Verified in Mice

Fouts, Derrick E., Tyler, Heather L., DeBoy, Robert T., Daugherty, Sean, Ren, Qinghu, Badger, Jonathan H., Durkin, Anthony S., Huot, Heather, Shrivastava, Susmita, Kothari, Sagar, Dodson, Robert J., M

Journal:

Year:

2008

Language:

english

File:

PDF, 969 KB

english, 2008

5

GGRaSP: A R-package for selecting representative genomes using Gaussian mixture models

Clarke, Thomas H, Brinkac, Lauren M, Sutton, Granger, Fouts, Derrick E

Journal:

Year:

2018

Language:

english

File:

PDF, 226 KB

english, 2018

6

The annotated complete DNA sequence of Enterococcus faecalis bacteriophage φEf11 and its comparison with all available phage and predicted prophage genomes

Roy H. Stevens, Mahmoud R. Ektefaie, Derrick E. Fouts

Journal:

FEMS Microbiology Letters

Year:

2011

Language:

english

File:

PDF, 834 KB

english, 2011

7

A Pseudomonas syringae pv. tomato DC3000 Hrp (Type III Secretion) Deletion Mutant Expressing the Hrp System of Bean Pathogen P. syringae pv. syringae 61 Retains Normal Host Specificity for Tomato

Fouts, Derrick E., Badel, Jorge L., Ramos, Adela R., Rapp, Ryan A., Collmer, Alan

Journal:

Molecular Plant-Microbe Interactions

Year:

2003

Language:

english

File:

PDF, 871 KB

english, 2003

8

LOCUST: A Custom Sequence Locus Typer for Classifying Microbial Isolates

Brinkac, Lauren M., Beck, Erin, Inman, Jason, Venepally, Pratap, Fouts, Derrick E., Sutton, Granger

Journal:

Year:

2017

Language:

english

File:

PDF, 73 KB

english, 2017

9

Characterization of the AmpC β-lactamase from Burkholderia multivorans

Becka, Scott A., Zeiser, Elise T., Barnes, Melissa D., Taracila, Magdalena A., Nguyen, Kevin, Singh, Indresh, Sutton, Granger G., LiPuma, John J., Fouts, Derrick E., Papp-Wallace, Krisztina M.

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2018

Language:

english

File:

PDF, 5.15 MB

english, 2018

10

AbGRI4, a novel antibiotic resistance island in multiply antibiotic-resistant Acinetobacter baumannii clinical isolates

Chan, Agnes P, Choi, Yongwook, Clarke, Thomas H, Brinkac, Lauren M, White, Richard C, Jacobs, Michael R, Bonomo, Robert A, Adams, Mark D, Fouts, Derrick E

Journal:

Journal of Antimicrobial Chemotherapy

Year:

2020

File:

PDF, 784 KB

2020

11

Major Structural Differences and Novel Potential Virulence Mechanisms from the Genomes of Multiple Campylobacter Species

Fouts, Derrick E., Mongodin, Emmanuel F., Mandrell, Robert E., Miller, William G., Rasko, David A., Ravel, Jacques, Brinkac, Lauren M., DeBoy, Robert T., Parker, Craig T., Daugherty, Sean C., Dodson,

Journal:

Year:

2005

Language:

english

File:

PDF, 544 KB

english, 2005

12

Structural Proteins of Enterococcus faecalis bacteriophage φEf11

Stevens, Roy H., Zhang, Hongming, Hsiao, Chaiwing, Kachlany, Scott, Tinoco, Eduardo M. B., DePew, Jessica, Fouts, Derrick E.

Journal:

Year:

2016

Language:

english

File:

PDF, 886 KB

english, 2016

13

Leptospiral Pathogenomics

Lehmann, Jason, Matthias, Michael, Vinetz, Joseph, Fouts, Derrick

Journal:

Year:

2014

Language:

english

File:

PDF, 2.17 MB

english, 2014

14

Population Structure, Molecular Epidemiology, and β-Lactamase Diversity among Stenotrophomonas maltophilia Isolates in the United States

Mojica, Maria F., Rutter, Joseph D., Taracila, Magdalena, Abriata, Luciano A., Fouts, Derrick E., Papp-Wallace, Krisztina M., Walsh, Thomas J., LiPuma, John J., Vila, Alejandro J., Bonomo, Robert A.,

Journal:

Year:

2019

Language:

english

File:

PDF, 4.30 MB

english, 2019

15

Complete Genome Sequence of Staphylococcus aureus Phage SA75, Isolated from Goat Feces

DâSouza, Roshan, White, Richard C., Buzzeo, Rachel, Goglin, Karrie, Vashee, Sanjay, Lee, Yoona, Son, Bokyung, Ryu, Sangryeol, Fouts, Derrick E., Roux, Simon

Journal:

Microbiology Resource Announcements

Year:

2020

File:

PDF, 202 KB

2020

16

TheBacillus anthracischromosome contains four conserved, excision-proficient, putative prophages

Shanmuga Sozhamannan, Michael D Chute, Farrell D McAfee, Derrick E Fouts, Arya Akmal, Darrell R Galloway, Alfred Mateczun, Leslie W Baillie, Timothy D Read

Journal:

BMC Microbiology

Year:

2006

Language:

english

File:

PDF, 771 KB

english, 2006

17

Bacterial translocation and changes in the intestinal microbiome in mouse models of liver disease

Derrick E. Fouts, Manolito Torralba, Karen E. Nelson, David A. Brenner, Bernd Schnabl

Journal:

Journal of Hepatology

Year:

2012

Language:

english

File:

PDF, 858 KB

english, 2012

18

Comparative Genome Analysis of Prevotella ruminicola and Prevotella bryantii: Insights into Their Environmental Niche

Janaki Purushe, Derrick E. Fouts, Mark Morrison, Bryan A. White, Roderick I. Mackie, North American Consortium for Rumen Bacteria, Pedro M. Coutinho, Bernard Henrissat and Karen E. Nelson

Journal:

Microbial Ecology

Year:

2010

Language:

english

File:

PDF, 1.56 MB

english, 2010

19

Intestinal REG3 Lectins Protect against Alcoholic Steatohepatitis by Reducing Mucosa-Associated Microbiota and Preventing Bacterial Translocation

Wang, Lirui, Fouts, Derrick E., Stärkel, Peter, Hartmann, Phillipp, Chen, Peng, Llorente, Cristina, DePew, Jessica, Moncera, Kelvin, Ho, Samuel B., Brenner, David A., Hooper, Lora V., Schnabl, Bernd

Journal:

Cell Host & Microbe

Year:

2016

Language:

english

File:

PDF, 3.71 MB

english, 2016

20

Integrated next-generation sequencing of 16S rDNA and metaproteomics differentiate the healthy urine microbiome from asymptomatic bacteriuria in neuropathic bladder associated with spinal cord injury

Derrick E Fouts, Rembert Pieper, Sebastian Szpakowski, Hans Pohl, Susan Knoblach, Moo-Jin Suh, Shih-Ting Huang, Inger Ljungberg, Bruce M Sprague, Sarah K Lucas, Manolito Torralba, Karen E Nelson, Suza

Journal:

Journal of Translational Medicine

Year:

2012

Language:

english

File:

PDF, 387 KB

english, 2012

21

Site-Specific Phosphorylation of the Human Immunodeficiency Virus Type-1 Rev Protein Accelerates Formation of an Efficient RNA-Binding Conformation †

Fouts, Derrick E., True, Heather L., Cengel, Keith A., Celander, Daniel W.

Journal:

Year:

1997

Language:

english

File:

PDF, 198 KB

english, 1997

22

Comprehensive Genome Analysis of Carbapenemase-Producing Enterobacter spp.: New Insights into Phylogeny, Population Structure, and Resistance Mechanisms

Chavda, Kalyan D., Chen, Liang, Fouts, Derrick E., Sutton, Granger, Brinkac, Lauren, Jenkins, Stephen G., Bonomo, Robert A., Adams, Mark D., Kreiswirth, Barry N.

Journal:

Year:

2016

Language:

english

File:

PDF, 4.37 MB

english, 2016

23

Multidrug resistant pathogens respond differently to the presence of co-pathogen, commensal, probiotic and host cells

Chan, Agnes P., Choi, Yongwook, Brinkac, Lauren M., Krishnakumar, Radha, DePew, Jessica, Kim, Maria, Hinkle, Mary K., Lesho, Emil P., Fouts, Derrick E.

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 5.57 MB

english, 2018

24

Whole genome sequencing and comparative genomic analyses of twoVibrio choleraeO139 Bengal-specificPodovirusesto other N4-like phages reveal extensive genetic diversity

Fouts, Derrick E, Klumpp, Jochen, Bishop-Lilly, Kimberly A, Rajavel, Mathumathi, Willner, Kristin M, Butani, Amy, Henry, Matthew, Biswas, Biswajit, Li, Manrong, Albert, M, Loessner, Martin J, Calendar

Journal:

Virology Journal

Year:

2013

Language:

english

File:

PDF, 2.68 MB

english, 2013

25

Pathogenomic Inference of Virulence-Associated Genes in Leptospira interrogans

Lehmann, Jason S., Fouts, Derrick E., Haft, Daniel H., Cannella, Anthony P., Ricaldi, Jessica N., Brinkac, Lauren, Harkins, Derek, Durkin, Scott, Sanka, Ravi, Sutton, Granger, Moreno, Angelo, Vinetz,

Journal:

PLoS Neglected Tropical Diseases

Year:

2013

Language:

english

File:

PDF, 1.66 MB

english, 2013

26

Newly-named Klebsiella aerogenes (formerly Enterobacter aerogenes ) is Associated with Poor Clinical Outcomes Relative to other Enterobacter Species in Patients with Bloodstream Infection

Wesevich, Austin, Sutton, Granger, Ruffin, Felicia, Park, Lawrence P., Fouts, Derrick, Fowler, Vance G., Thaden, Joshua T.

Journal:

Journal of Clinical Microbiology

Year:

2020

File:

PDF, 5.63 MB

2020

27

Clostridium perfringensbacteriophages ΦCP39O and ΦCP26F: genomic organization and proteomic analysis of the virions

Bruce S. Seal, Derrick E. Fouts, Mustafa Simmons, Johnna K. Garrish, Robin L. Kuntz, Rebekah Woolsey, Kathleen M. Schegg, Andrew M. Kropinski, Hans-W. Ackermann, Gregory R. Siragusa

Journal:

Archives of Virology

Year:

2011

Language:

english

File:

PDF, 538 KB

english, 2011

28

NeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly

McCorrison, Jamison M, Venepally, Pratap, Singh, Indresh, Fouts, Derrick E, Lasken, Roger S, Methé, Barbara A

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 2.43 MB

english, 2014

29

Translationally repressive RNA structures monitored in vivo using temperate DNA bacteriophages

Derrick E. Fouts, Daniel W. Celander

Journal:

Year:

1998

Language:

english

File:

PDF, 148 KB

english, 1998

30

Whole Genome Analysis of Leptospira licerasiae Provides Insight into Leptospiral Evolution and Pathogenicity

Ricaldi, Jessica N., Fouts, Derrick E., Selengut, Jeremy D., Harkins, Derek M., Patra, Kailash P., Moreno, Angelo, Lehmann, Jason S., Purushe, Janaki, Sanka, Ravi, Torres, Michael, Webster, Nicholas J

Journal:

PLoS Neglected Tropical Diseases

Year:

2012

Language:

english

File:

PDF, 1.00 MB

english, 2012

31

Su1595 CHANGES IN GUT MICROBIOME IN PATIENTS WITH ALCOHOLIC HEPATITIS: HOW DISEASE SEVERITY CORRELATES WITH REDUCED MICROBIOTA DIVERSITY

Fairfield, Bradley S., Lang, Sonja, Gao, Bei, Fouts, Derrick E., Schnabl, Bernd

Journal:

Gastroenterology

Year:

2020

File:

PDF, 195 KB

2020

32

The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria

Read, Timothy D., Peterson, Scott N., Tourasse, Nicolas, Baillie, Les W., Paulsen, Ian T., Nelson, Karen E., Tettelin, Hervé, Fouts, Derrick E., Eisen, Jonathan A., Gill, Steven R., Holtzapple, Erik K

Journal:

Year:

2003

Language:

english

File:

PDF, 1.46 MB

english, 2003

33

PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes

Clarke, Thomas H., Brinkac, Lauren M., Inman, Jason M., Sutton, Granger, Fouts, Derrick E.

Journal:

BMC Bioinformatics

Year:

2018

Language:

english

File:

PDF, 1.11 MB

english, 2018

34

Large-Scale Comparative Analysis of Microbial Pan-genomes using PanOCT

Inman, Jason M, Sutton, Granger G, Beck, Erin, Brinkac, Lauren M, Clarke, Thomas H, Fouts, Derrick E, Hancock, John

Journal:

Year:

2018

Language:

english

File:

PDF, 322 KB

english, 2018

35

Complete Genome Sequence of Broad-Host-Range Staphylococcus aureus Myophage ESa1

DâSouza, Roshan, Filippov, Andrey A., Sergueev, Kirill V., He, Yunxiu, Ward, Amanda M., Goglin, Karrie, Vashee, Sanjay, Nikolich, Mikeljon P., Fouts, Derrick E., Dennehy, John J.

Journal:

Microbiology Resource Announcements

Year:

2020

File:

PDF, 191 KB

2020

36

Genomic Comparison Among Global Isolates of L. interrogans Serovars Copenhageni and Icterohaemorrhagiae Identified Natural Genetic Variation Caused by an Indel

Santos, Luciane A., Adhikarla, Haritha, Yan, Xiting, Wang, Zheng, Fouts, Derrick E., Vinetz, Joseph M., Alcantara, Luiz C. J., Hartskeerl, Rudy A., Goris, Marga G. A., Picardeau, Mathieu, Reis, Miterm

Journal:

Frontiers in Cellular and Infection Microbiology

Year:

2018

Language:

english

File:

PDF, 1.43 MB

english, 2018

37

3 Downregulation of Anti-Microbial Proteins Regenerating Islet-Derived 3 Beta (Reg3b) and Gamma (Reg3g) Contributes to Enteric Dysbiosis in Alcoholic Liver Disease

Yan, Arthur W., Brandl, Johannes, Torralba, Manolito, Fouts, Derrick E., Schott, Eckart, Tsukamoto, Hidekazu, Nelson, Karen E., Brenner, David A., Schnabl, Bernd

Journal:

Gastroenterology

Year:

2010

Language:

english

File:

PDF, 68 KB

english, 2010

38

Sequence Type 393 Associated with Increased Mortality in Escherichia coli Bloodstream Infections

Thaden, Joshua T, Sutton, Granger, Ruffin, Felicia, Fouts, Derrick, Fowler, Vance

Journal:

Open Forum Infectious Diseases

Year:

2017

File:

PDF, 428 KB

2017

39

Monitoring Ceftazidime-Avibactam (CAZ-AVI) and Aztreonam (ATM) Concentrations in the Treatment of a Bloodstream Infection Caused by a Multidrug-Resistant Enterobacter sp. Carrying both KPC-4 and NDM-1 Carbapenemases

Yasmin, Mohamad, Fouts, Derrick E, Jacobs, Michael R, Haydar, Hanan, Marshall, Steven H, White, Richard, D’Souza, Roshan, Lodise, Thomas P, Rhoads, Daniel D, Hujer, Andrea M, Rojas, Laura J, Hoyen, Cl

Journal:

Clinical Infectious Diseases

Year:

2019

File:

PDF, 237 KB

2019

40

Comparative ICE Genomics: Insights into the Evolution of the SXT/R391 Family of ICEs

Wozniak, Rachel A. F., Fouts, Derrick E., Spagnoletti, Matteo, Colombo, Mauro M., Ceccarelli, Daniela, Garriss, Geneviève, Déry, Christine, Burrus, Vincent, Waldor, Matthew K., Matic, Ivan

Journal:

Year:

2009

Language:

english

File:

PDF, 1.57 MB

english, 2009

41

Changes in the fecal bacterial microbiota associated with disease severity in alcoholic hepatitis patients

Lang, Sonja, Fairfied, Bradley, Gao, Bei, Duan, Yi, Zhang, Xinlian, Fouts, Derrick E., Schnabl, Bernd

Journal:

Year:

2020

File:

PDF, 4.35 MB

2020

42

Intestinal permeability, microbial translocation, changes in duodenal and fecal microbiota, and their associations with alcoholic liver disease progression in humans

Maccioni, Luca, Gao, Bei, Leclercq, Sophie, Pirlot, Boris, Horsmans, Yves, De Timary, Philippe, Leclercq, Isabelle, Fouts, Derrick, Schnabl, Bernd, StÃ¤rkel, Peter

Journal:

Year:

2020

File:

PDF, 15.47 MB

2020

43

Enteric dysbiosis associated with a mouse model of alcoholic liver disease

Arthur W. Yan, Derrick E. Fouts, Johannes Brandl, Peter Stärkel, Manolito Torralba, Eckart Schott, Hide Tsukamoto, Karen E. Nelson, David A. Brenner, Bernd Schnabl

Journal:

Year:

2011

Language:

english

File:

PDF, 2.80 MB

english, 2011

44

Reciprocal Secretion of Proteins by the Bacterial Type III Machines of Plant and Animal Pathogens Suggests Universal Recognition of mRNA Targeting Signals

Deborah M. Anderson, Derrick E. Fouts, Alan Collmer and Olaf Schneewind

Journal:

Proceedings of the National Academy of Sciences

Year:

1999

Language:

english

File:

PDF, 1.04 MB

english, 1999

45

Next Generation Sequencing to Define Prokaryotic and Fungal Diversity in the Bovine Rumen

Fouts, Derrick E., Szpakowski, Sebastian, Purushe, Janaki, Torralba, Manolito, Waterman, Richard C., MacNeil, Michael D., Alexander, Leeson J., Nelson, Karen E., Kolokotronis, Sergios-Orestis

Journal:

Year:

2012

Language:

english

File:

PDF, 788 KB

english, 2012

46

387 Restoration of Intestinal Metabolic Homeostasis Results in Eubiosis and Protects Mice From Alcoholic Liver Disease

Chen, Peng, Torralba, Manolito, Zengler, Karsten, Mutlu, Ece, Keshavarzian, Ali, Tsukamoto, Hidekazu, Nelson, Karen E., Brenner, David A., Fouts, Derrick E., Schnabl, Bernd

Journal:

Gastroenterology

Year:

2014

Language:

english

File:

PDF, 166 KB

english, 2014

47

Next generation sequencing technologies and the changing landscape of phage genomics

Klumpp, Jochen, Fouts, Derrick E., Sozhamannan, Shanmuga

Journal:

Year:

2012

Language:

english

File:

PDF, 434 KB

english, 2012

48

Comparative Genome Analysis ofPrevotella ruminicolaandPrevotella bryantii: Insights into Their Environmental Niche

Janaki Purushe, Derrick E. Fouts, Mark Morrison, Bryan A. White, Roderick I. Mackie, the North American Consortium for Rumen Bacteria, Pedro M. Coutinho, Bernard Henrissat, Karen E. Nelson

Journal:

Microbial Ecology

Year:

2010

Language:

english

File:

PDF, 433 KB

english, 2010

49

Enterobacter hormaechei subsp. hoffmannii subsp. nov., Enterobacter hormaechei subsp. xiangfangensis comb. nov., Enterobacter roggenkampii sp. nov., and Enterobacter muelleri is a later heterotypic synonym of Enterobacter asburiae based on computational analysis of sequenced Enterobacter genomes.

Sutton, Granger G., Brinkac, Lauren M., Clarke, Thomas H., Fouts, Derrick E.

Journal:

Year:

2018

File:

PDF, 2.00 MB

2018

50

Ceftazidime-Avibactam in Combination With Fosfomycin: A Novel Therapeutic Strategy Against Multidrug-Resistant Pseudomonas aeruginosa

Papp-Wallace, Krisztina M, Zeiser, Elise T, Becka, Scott A, Park, Steven, Wilson, Brigid M, Winkler, Marisa L, D’Souza, Roshan, Singh, Indresh, Sutton, Granger, Fouts, Derrick E, Chen, Liang, Kreiswir

Journal:

The Journal of Infectious Diseases

Year:

2019

Language:

english

File:

PDF, 481 KB

english, 2019

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